PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G046200.1
Common NamePOPTR_0007s10780g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 535aa    MW: 59505.4 Da    PI: 7.2328
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G046200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17174223155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.007G046200.1 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223
                         78*******************......55************************997 PP

2AP243.76.9e-14266316155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Potri.007G046200.1 266 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 316
                         89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-9174223IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-15174232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-16175231IPR001471AP2/ERF domain
PROSITE profilePS5103217.53175231IPR001471AP2/ERF domain
SMARTSM003802.1E-31175237IPR001471AP2/ERF domain
CDDcd000181.52E-11175232No hitNo description
PfamPF008471.5E-9266316IPR001471AP2/ERF domain
CDDcd000182.81E-25266326No hitNo description
SuperFamilySSF541716.34E-17266326IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-16267324IPR001471AP2/ERF domain
PROSITE profilePS5103215.461267324IPR001471AP2/ERF domain
SMARTSM003804.2E-31267330IPR001471AP2/ERF domain
PRINTSPR003675.3E-6268279IPR001471AP2/ERF domain
PRINTSPR003675.3E-6306326IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MWNLNDSPDQ TRDDESEGCS SQKTSIDGED DKGKRVGSVS NSSSSAVVFE DGSEEEDAVG  60
EKGNKIIKKR SISFSSSSSS KIFGFSVPYD QYSMDMSDPP VTRQFFPLED QEMGSTSGGG  120
GSFGGGDGVG GGFPRAHWVG VKFCQSESSL ASQKSMEVSQ PLKKSRRGPR SRSSQYRGVT  180
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF RIEDYEEDLK  240
QMSNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE  300
IEAARAYDKA AIKCNGKEAV TNFDPSIYEN ELNSNESPGN AADHNLDLSL GNPASKQNSI  360
EFGQDRHNVA MEQHSATMPF EPNWQNRGLR PKQLNLCTSD NDGHGRDGYG ETETTQLLSK  420
IHIQSPASLK SSEMPRYEQF RRSLGDSQMH PFLPPQYNSP NYQTQHPSSS NGGRIGSDLS  480
LSPSELHYNH HYQQWQAGPP RFANAAASSG FQQQIRTPQN WLQKNGFNSL MRPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.104940.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4772950.0KC477295.1 Populus tomentosa AP2-1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310715.10.0APETAL2-like family protein
SwissprotP479271e-131AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB9HH990.0B9HH99_POPTR; APETAL2-like family protein
STRINGPOPTR_0007s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-121AP2 family protein